Publication Search Results
Exact matches for:
- Author = Kim HJ [web profile page]
1.
Chen C, Kim HJ, Yang P
Carissa Chen, Hani Jieun Kim and Pengyi Yang:
Evaluating spatially variable gene detection methods for spatial transcriptomics data,
Genome Biology,
25
(2024),
no. Open Access,
Article 18 (21 pages).
2.
Kim D, Tran A, Kim HJ, Lin Y, Yang YH, Yang P
Daniel Kim, Andy Tran, Hani Jieun Kim, Yingxin Lin, Jean Yee Hwa Yang & Pengyi Yang:
Gene regulatory network reconstruction: harnessing the power of single-cell multi-omic data,
npj Systems Biology and Applications,
9
(2023),
Article number 51.
3.
Kim HJ, O'Hara-Wright M, Kim D, Loi TH, Lim BY, Jamieson RV, Gonzalez-Cordero A, Yang P
Hani Jieun Kim, Michelle O'Hara-Wright, Daniel Kim, To Ha Loi, Benjamin Y. Lim, Robyn V. Jamieson, Anai Gonzalez-Cordero and Pengyi Yang:
Comprehensive characterization of fetal and mature retinal cell identity to assess the fidelity of retinal organoids,
Stem Cell Reports,
18
(2023),
no. 1,
175–189.
4.
Xiao D, Kim HJ, Pang I, Yang P
Di Xiao, Hani Jieun Kim, Ignatius Pang and Pengyi Yang:
Functional analysis of the stable phosphoproteome reveals cancer vulnerabilities,
Bioinformatics,
38
(2022),
no. 7,
1956–1963.
5.
Robertson H, Li J, Kim HJ, Rhodes JW, Harman AN, Patrick E, Rogers NM
Harry Robertson, Jennifer Li, Hani Jieun Kim, Jake W Rhodes, Andrew N Harman, Ellis Patrick and Natasha M Rogers:
Transcriptomic Analysis Identifies A Tolerogenic Dendritic Cell Signature,
Frontiers in Immunology,
12
(2021),
733231 (14 pages).
6.
Kim HJ, Tam PPL, Yang P
Hani Jieun Kim, Patrick P L Tam, and Pengyi Yang:
Defining cell identity beyond the premise of differential gene expression,
Cell Regeneration,
10:20
(2021),
no. 1,
3 pages.
7.
Kim HJ, Kim T, Xiao D, Yang P
Hani Jieun Kim,Taiyun Kim, Di Xiao, and Pengyi Yang:
Protocol for the processing and downstreamanalysis of phosphoproteomic data with PhosR,
STAR Protocols,
2 (Open Access)
(2021),
no. 2,
Article number 100585 – 22 pages.
8.
Norris DM, Yang P, Shin SY, Kearney AL, Kim HJ, Geddes TA, Senior AM, Fazakerley DJ, Nguyen LK, James DE, Burchfield JG
Dougall Norris, Pengyi Yang, Sung-Young Shin, Alison L Kearney, Hani Jieun Kim, Thomas Geddes, Alistair M Senior, Daniel J Fazakerley, Lan K Nguyen, David E James and James G Burchfield:
Signaling Heterogeneity is Defined by Pathway Architecture and Intercellular Variability in Protein Expression,
iScience (Open Access),
24
(2021),
no. 2,
Art. 102118 (24 pages).
9.
Kim HJ, Kim T, Hoffman NJ, Xiao D, James DE, Humphrey SJ, Yang P
Hani Jieun Kim, Taiyun Kim, Nolan J. Hoffman, Di Xiao, David E. James, Sean J. Humphrey, Pengyi Yang:
PhosR enables processing and functional analysis of phosphoproteomic data,
Cell Reports,
34
(2021),
no. 8,
108771.
10.
Lin Y, Cao Y, Kim HJ, Salim A, Speed TP, Lin DM, Yang P, Yang YH
Yingxin Lin, Yue Cao, Hani Jieun Kim, Agus Salim, Terence P Speed, David M Lin, Pengyi Yang, Jean Yee Hwa Yang:
scClassify: sample size estimation and multiscale classification of cells using single and multiple reference,
Molecular Systems Biology,
16
(2020),
e9389.
11.
Kim HJ, Lin Y, Geddes TA, Yang P, Yang YH
Hani Jieun Kim, Yingxin Lin, Thomas A Geddes, Jean Yee Hwa Yang, Pengyi Yang:
CiteFuse enables multi-modal analysis of CITE-seq data,
Bioinformatics,
36
(2020),
4137–4143.
12.
Kim T, Lo KK, Geddes TA, Kim HJ, Yang YH, Yang P
Taiyun Kim, Kitty Lo, Thomas A Geddes, Hani Jieun Kim, Jean Yee Hwa Yang and Pengyi Yang:
scReClassify: post hoc cell type classification of single-cell rNA-seq data,
BMC Genomics,
20
(2019),
no. Suppl 9:913,
10 pages.
| Number of matches: 12 |