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1. Brankin A, Malone KM, Barilar I, Battaglia S, Borroni E, Brandao AP, Cabibbe AM, Carter J, Chetty D, Cirillo DM, Claxton P, Clifton DA, Cohen T, Coronel J, Crook DW, Dreyer V, Earle SG, Escuyer V, Ferrazoli L, Gao GF, Gardy J, Gharbia S, Ghisi KT, Ghodousi A, Cruz AL, Grandjean L, Grazian C, Groenheit R, Guthrie JL, He W, Hoffmann H, Hoosdally SJ, Hunt M, Ismail NA, Jarrett L, Joseph L, Jou R, Kambli P, Khot R, Knaggs J, Koch A, Kohlerschmidt D, Kouchaki S, Lachapelle AS, Lalvani A, Lapierre SJ, Laurenson IF, Letcher B, Lin WH, Liu C, Liu D, Mandal A, Mansjo M, Matias D, Meintjes G, Mendes FF, Merker M, Mihalic M, Millard J, Miotto P, Mistry N, Moore D, Musser KA, Ngcamu D, Nhung HN, Niemann S, Nilgiriwala KS, Nimmo C, O’Donnell M, Okozi N, Siqueira de Oliveira R, Omar SV, Paton N, Peto TEA, Pinhata JMW, Plesnik S, Puyen ZM, Rabodoarivelo MS, Rakotosamimanana N, Rancoita PMV, Rathod P, Robinson E, Rodger G, Rodrigues C, Rodwell TC, Roohi A, Santos-Lazaro D, Shah S, Kohl TA, Smith G, Solano W, Spitaleri A, Supply P, Steyn AJC, Surve U, Tahseen S, Thuong NTT, Thwaites G, Todt K, Trovato A, Utpatel C, Rie A, Vijay S, Walker TM, Walker AS, Warren R, Werngren J, Wijkander M, Wilkinson RJ, Wilson DJ, Wintringer P, Xiao YX, Yang Y, Yanlin Z, Yao SY, Zhu B, Fowler PW, Iqbal Z
Brankin, A., Malone, K.M., Barilar, I., Battaglia, S., Borroni, E., Brandao, A.P., Cabibbe, A.M., Carter, J., Chetty, D., Cirillo, D.M., Claxton, P., Clifton, D.A., Cohen, T., Coronel, J., Crook, D.W., Dreyer, V., Earle, S.G., Escuyer, V., Ferrazoli, L., Gao, G.F., Gardy, J., Gharbia, S., Ghisi, K.T., Ghodousi, A., Gibertoni Cruz, A.L., Grandjean, L., Grazian, C., Groenheit, R., Guthrie, J.L., He, W., Hoffmann, H., Hoosdally, S.J., Hunt, M., Ismail, N.A., Jarrett, L., Joseph, L., Jou, R., Kambli, P., Khot, R., Knaggs, J., Koch, A., Kohlerschmidt, D., Kouchaki, S., Lachapelle, A.S., Lalvani, A., Lapierre, S.J., Laurenson, I.F., Letcher, B., Lin, W.H., Liu, C., Liu, D., Mandal, A., Mansjo, M., Matias, D., Meintjes, G., Mendes, F.d.F., Merker, M., Mihalic, M., Millard, J., Miotto, P., Mistry, N., Moore, D., Musser, K.A., Ngcamu, D., Nhung, H.N., Niemann, S., Nilgiriwala, K.S., Nimmo, C., O’Donnell, M., Okozi, N., Oliveira, R.S., Omar, S.V., Paton, N., Peto, T.E.A., Pinhata, J.M.W., Plesnik, S., Puyen, Z.M., Rabodoarivelo, M.S., Rakotosamimanana, N., Rancoita, P.M.V., Rathod, P., Robinson, E., Rodger, G., Rodrigues, C., Rodwell, T.C., Roohi, A., Santos-Lazaro, D., Shah, S., Kohl, T.A., Smith, G., Solano, W., Spitaleri, A., Supply, P., Steyn, A.J.C., Surve, U., Tahseen, S., Thuong, N.T.T., Thwaites, G., Todt, K., Trovato, A., Utpatel, C., Van Rie, A., Vijay, S., Walker, T.M., Walker, A.S., Warren, R., Werngren, J., Wijkander, M., Wilkinson, R.J.,Wilson, D.J., Wintringer, P., Xiao, Y.X., Yang, Y., Yanlin, Z., Yao, S.Y., Zhu, B., Fowler, P.W., Iqbal, Z.: A data compendium associating the genomes of 12,289 Mycobacterium tuberculosis isolates with quantitative resistance phenotypes to 13 antibiotics, PLoS Biology, 20 (2022), no. 8, e3001721.

2. Earle SG, Wilson DJ, Barilar I, Battaglia S, Borroni E, Brandao AP, Brankin A, Cabibbe AM, Carter J, Chetty D, Cirillo DM, Claxton P, Clifton DA, Cohen T, Coronel J, Crook DW, Dreyer V, Escuyer V, Ferrazoli L, Fowler PW, Gao GF, Gardy J, Gharbia S, Ghisi KT, Ghodousi A, Cruz AL, Grandjean L, Grazian C, Groenheit R, Guthrie JL, He W, Hoffmann H, Hoosdally SH, Hunt M, Iqbal Z, Ismail NA, Jarrett L, Joseph L, Jou R, Kambli P, Khot R, Knaggs J, Koch A, Kohlerschmidt D, Kouchaki S, Lachapelle AS, Lalvani A, Lapierre SG, Laurenson IF, Letcher B, Lin WH, Liu C, Liu D, Malone KM, Mandal A, Mansjo M, Matias D, Meintjes G, Mendes FF, Merker M, Mihalic M, Millard J, Miotto P, Mistry N, Moore D, Musser KA, Ngcamu D, Nhung H, Niemann S, Nilgiriwala KS, Nimmo C, O’Donnell M, Okozi N, Siqueira de Oliveira R, Omar SV, Paton PN, Peto TEA, Pinhata TMW, Plesnik S, Puyen ZM, Rabodoarivelo MS, Rakotosamimanana N, Rancoita PMV, Rathod P, Robinson E, Rodger G, Rodrigues C, Rodwell TC, Roohi A, Santos-Lazaro D, Shah S, Kohl TA, Smith G, Solano W, Spitaleri A, Supply P, Steyn AJC, Surve U, Tahseen S, Thuong NT, Thwaites G, Todt K, Trovato A, Utpatel C, Rie A, Vijay S, Walker TM, Walker AS, Warren R, Werngren J, Wijkander M, Wilkinson RJ, Wintringer P, Xiao YX, Yang Y, Yanlin Z, Yao SY, Zhu B
Earle, S.G., Wilson, D.J, Barilar, I., Battaglia, S., Borroni, E., Brandao, A.P., Brankin, A., Cabibbe, A.M., Carter, J., Chetty, D., Cirillo, D.M., Claxton, P., Clifton, D.A., Cohen, T., Coronel, J., Crook, D.W., Dreyer, V., Escuyer, V., Ferrazoli, L., Fowler, P.W., Gao, G.F., Gardy, J., Gharbia, S., Ghisi, K.T., Ghodousi, A., Gibertoni Cruz, A.L., Grandjean, L., Grazian, C., Groenheit, R., Guthrie, J.L., He, W., Hoffmann, H., Hoosdally, S.H., Hunt, M., Iqbal, Z., Ismail, N.A., Jarrett, L., Joseph, L., Jou, R., Kambli, P., Khot, R., Knaggs, J., Koch, A., Kohlerschmidt, D., Kouchaki, S., Lachapelle, A.S., Lalvani, A., Lapierre, S.G., Laurenson, I.F., Letcher, B., Lin, W.H., Liu, C., Liu, D., Malone, K.M., Mandal, A., Mansjo, M., Matias, D., Meintjes, G., Mendes, FdF, Merker, M., Mihalic, M., Millard, J., Miotto, P., Mistry, N., Moore, D., Musser, K.A., Ngcamu, D., Ngoc Nhung, H., Niemann, S., Nilgiriwala, K.S., Nimmo, C., O’Donnell, M., Okozi, N., Oliveira, R.S., Omar, S.V., Paton, N., Peto, T.E.A., Pinhata, T.M.W., Plesnik, S., Puyen, Z.M., Rabodoarivelo, M.S., Rakotosamimanana, N., Rancoita, P.M.V., Rathod, P., Robinson, E., Rodger, G., Rodrigues, C., Rodwell, T.C., Roohi, A., Santos-Lazaro, D., Shah, S., Kohl, T.A., Smith, G., Solano, W., Spitaleri, A., Supply, P., Steyn, A.J.C., Surve, U., Tahseen, S., Thuong Thuong, N.T., Thwaites, G., Todt, K., Trovato, A., Utpatel, C., Van Rie, A., Vijay, S., Walker, T.M., Walker, A.S., Warren, R., Werngren, J., Wijkander, M., Wilkinson, R.J., Wintringer, P., Xiao, Y.X., Yang, Y., Yanlin, Z., Yao, S.Y., Zhu, B.: Genome-wide association studies of global Mycobacterium tuberculosis resistance to 13 antimicrobials in 10,228 genomes identify new resistance mechanisms, PLoS Biology, 20 (2022), no. 8, e3001755.

3. Fowler PW, Barilar I, Battaglia S, Borroni E, Brandao AP, Brankin A, Cabibbe AM, Carter J, Cirillo DM, Claxton P, Clifton DA, Cohen T, Coronel J, Crook DW, Dreyer V, Earle SG, Escuyer V, Ferrazoli L, Gao GF, Gardy J, Gharbia S, Ghisi KT, Ghodousi A, Gibertini Cruz AL, Grandjean L, Grazian C, Groenheit R, Guthrie JL, He W, Hoffman H, Hoosdally SJ, Hunt M, Iqbal Z, Ismail NA, Jarrett L, Joseph L, Jou R, Kambli P, Khot R, Knaggs J, Koch A, Kohlerschmidt D, Kouchaki S, Lachapelle AS, Lalvani A, Lapierre SG, Laurenson IF, Letcher B, Lin WH, Liu C, Liu D, Malone KM, Mandal A, Mansjo M, Matias D, Meintjes G, Mendes F, Merker M, Mihalic M, Millard J, Miotto P, Mistry N, Moore, Musser KA, Ngcamu D, Nhung HN, Niemann S, Nilgiriwala KS, Nimmo C, Okozi N, Oliveira RS, Omar SV, Paton N, Peto TEA, Pinhata JMW, Plesnik, Puyen ZM, Rabodoarivelo MS, Rakotosamimanana N, Rancoita PMV, Rathod P, Robinson E, Rodger G, Rodrigues C, Rodwell TC, Roohi A, Santos-Lazaro D, Shah S, Kohl TA, Smith G, Solano W, Spitaleri A, Supply P, Surve U, Tahseen S, Thuong NTT, Thwaites G, Todt K, Trovato A, Utpatel C, Rie A, Vijay S, Walker TM, Walker AS, Warren R, Werngren J, Wijkander M, Wilkinson RJ, Wilson DJ, Wintringer P, Xiao YX, Yang Y, Yanlin Z, Yao SY, Zhu B
The CRyPTIC Consortium: Epidemiological cutoff values for a 96-well broth microdilution plate for high-throughput research antibiotic susceptibility testing of M. tuberculosis, European Respiratory Journal, 13993003 (2022), 1.

4. Walker TM, Miotto P, Koser CU, Fowler PW, Knaggs J, Iqbal Z, Hunt M, Chindelevitch L, Farhat M, Cirillo DM, Comas I, Posey J, Omar SV, Peto TEA, Suresh A, Uplekar S, Laurent S, Colman R, Nathanson CM, Zignol M, Walker AS, Barilar I, Battaglia S, Borroni E, Brandao AP, Brankin A, Cabibbe AM, Carter J, Claxton P, Clifton DA, Cohen T, Coronel J, Dreyer V, Earle SG, Escuyer V, Ferrazoli L, Gao GF, Gardy J, Gharbia S, Ghisi KT, Ghodousi A, Gibertoni Cruz AL, Grazian C, Guthrie JL, He W, Hoffmann H, Hoosdally SJ, Jarrett L, Joseph L, Jou R, Kambli K, Khot R, Koch A, Kohl TA, Kohlerschmidt D, Kouchaki S, Lachapelle AS, Lalvani A, Lapierre G, Laurenson IF, Letcher B, Lin WH, Liu C, Liu D, Malone KM, Mandal A, Matias D, Meintjes G, Mendes F, Merker M, Mihalic M, Millard J, Mistry N, Moore D, Musser KA, Ngcamu D, Nhung HN, Niemann S, Nilgiriwala KS, Nimmo C, Okozi N, Oliveira R, Paton N, Pinhata JMW, Plesnik S, Puyen ZM, Rabodoarivelo MS, Rakotosamimanana N, Rancoita PMV, Rathod P, Robinson E, Rodger G, Rodrigues C, Roohi A, Santos-Lazaro D, Shah S, Smith G, Solano W, Spitaleri A, Supply P, Surve U, Tahseen S, Thuong NTT, Thwaites G, Todt K, Trovato A, Utpatel C, Rie A, Vijay S, Warren R, Werngren J, Wilkinson RJ, Wilson DJ, Wintringer P, Xiao YX, Yang Y, Yanlin Z, Yao SY, Zhu B, Albert H, Andre E, Andrews J, Arandjelovic I, Bainomugisa A, Ballif M, Barbova A, Neto D, Baulard A, Botther E, Caws M, Chaiprasert A, Chetty D, Coll F, Cook V, Cortes T, Coulter C, Cox H, Cristoffels A, Diel R, Duncan C, Dunstan S, Egger M, Faksri K, Fitzgibbon M, Furio V, Gagneux S, Halse T, Hasan Z, Holt K, Inouye M, Jamieson F, Javid B, Johnston J, Joloba M, Jorgensen D, Kamal M, Kasule G, Keller P, Kelly E, Kohlerschmidt D, Kong C, Kus J, Lapierre P, Rossolini GM, Loembe MM, Mathys V, Menardo F, Mendoza A, Metcalfe J, Mitarai S, O'Donnell M, Hee R, Pandey S, Piatek A, Prammananan T, Qin Y, Rigouts L, Robledo J, Rodrigues M, Rogers T, Roycroft E, Saphonn V, Schito M, Shea J, Sintchenko V, Skrahina A, Srilohasin P, Steyn A, Suriyaphol P, Tang P, Taylor J, Thi Minh Ha D, van Soolingen D, van Gemert W, Vuong Kahc Thai P, Whitfield M, Wilcox M, William T, Wu MH, Yik Ying T, Zimenkov D, Crook DW, Ismail N, Rodwell T
Timothy M Walker, Paolo Miotto, Claudio U Köser, Philip W Fowler, Jeff Knaggs, Zamin Iqbal, Martin Hunt, Leonid Chindelevitch, Maha R Farhat, Daniela Maria Cirillo, Iñaki Comas, James Posey, Shaheed V Omar, Timothy EA Peto, Anita Suresh, Swapna Uplekar, Sacha Laurent, Rebecca E Colman, Carl-Michael Nathanson, Matteo Zignol, Ann Sarah Walker, Derrick W Crook, Nazir Ismail, Timothy C Rodwell, the CRyPTIC Consortium, the Seq&Treat Consortium: The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: A new global standard for molecular diagnostics, The Lancet Microbe, 3 (2022), e265–e273.

5. Hunt M, Letcher B, Malone KM, Nguyen G, Hall MB, Colquhoun RM, Lima L, Schatz MC, Ramakrishnan S, Barilar I, Battaglia S, Borroni E, Brandao AP, Brankin A, Cabibbe AM, Carter J, Chetty D, Cirillo DM, Claxton P, Clifton DA, Cohen T, Coronel J, Crook DW, Dreyer V, Earle SG, Escuyer V, Ferrazoli L, Fowler PW, Gao GF, Gardy J, Gharbia S, Ghisi KT, Ghodousi A, Grandjean L, Grazian C, Groenheit R, Guthrie JL, He W, Hoffmann H, Hunt M, Iqbal Z, Ismail NA, Jarrett L, Joseph L, Jou R, Kambli P, Khot R, Knaggs J, Koch A, Kohlerschmidt D, Kouchaki S, Lachapelle AS, Lalvani A, Lapierre SG, Laurenson IF, Letcher B, Lin WH, Liu C, Liu D, Malone KM, Mandal A, Mansj M, Matias D, Meintjes G, Mendes FdF, Merker M, Mihalic M, Millard J, Miotto P, Mistry N, Moore D, Musser KA, Ngcamu D, Nhung HN, Niemann S, Nilgiriwala KS, Nimmo C, O'Donnell M, Okozi N, Oliveira RS, Omar SV, Paton N, Peto TEA, Pinhata JMW, Plesnik S, Puyen ZM, Rabodoarivelo MS, Rakotosamimanana N, Rancoita PMV, Rathod P, Robinson E, Rodger G, Rodrigues C, Rodwell TC, Roohi A, Santos-Lazaro D, Shah S, Kohl TA, Smith G, Solano W, Spitaleri A, Supply P, Steyn AJC, Surve U, Tahseen S, Thuong NTT, Thwaites G, Todt K, Trovato A, Utpatel C, Van Rie A, Vijay S, Walker TM, Walker SA, Warren R, Werngren J, Wijkander M, Wilkinson RJ, Wilson DJ, Wintringer P, Xiao YX, Yang Y, Yanlin Z, Yao SY, Zhu B, Iqbal Z
Martin Hunt, Brice Letcher, Kerri M. Malone, Giang Nguyen, Michael B. Hall, Rachel M. Colquhoun, Leandro Lima, Michael C. Schatz, Srividya Ramakrishnan, CRyPTIC consortium and Zamin Iqbal: Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes, Genome Biology, 23 (2022), 147.

6. Fowler PW, Wright C, Spiers H, Zhu T, Baeten EML, Hoosdally SW, Gibertoni Cruz AL, Roohi A, Kouchaki S, Walker TM, Peto TEA, Miller G, Lintott C, Clifton D, Crook DW, Walker AS, Barilar I, Battaglia S, Borroni E, Brandao AP, Brankin A, Cabibbe AM, Carter J, Chetty D, Cirillo DM, Claxton P, Cohen T, Coronel J, Dreyer V, Earle SG, Escuyer V, Ferrazoli L, Gao GF, Gardy J, Gharbia S, Ghisi KT, Ghodousi A, Grandjean L, Grazian C, Groenheit R, Guthrie JL, He W, Hoffmann H, Hunt M, Iqbal Z, Ismail NA, Jarrett L, Joseph L, Jou R, Kambli P, Khot R, Knaggs J, Koch A, Kohlerschmidt D, Lachapelle AS, Lalvani A, Lapierre SG, Laurenson IF, Letcher B, Lin WH, Liu C, Liu D, Malone KM, Mandal A, Mansj M, Matias D, Meintjes G, Mendes FdF, Merker M, Mihalic M, Millard J, Miotto P, Mistry N, Moore D, Musser KA, Ngcamu D, Nhung HN, Niemann S, Nilgiriwala KS, Nimmo C, O'Donnell M, Okozi N, Oliveira RS, Omar SV, Paton N, Pinhata JMW, Plesnik S, Puyen ZM, Rabodoarivelo MS, Rakotosamimanana N, Rancoita PMV, Rathod P, Robinson E, Rodger G, Rodrigues C, Rodwell TC, Santos-Lazaro D, Shah S, Kohl TA, Smith G, Solano W, Spitaleri A, Supply P, Steyn AJC, Surve U, Tahseen S, Thuong NTT, Thwaites G, Todt K, Trovato A, Utpatel C, Van Rie A, Vijay S, Warren R, Werngren J, Wijkander M, Wilkinson RJ, Wilson DJ, Wintringer P, Xiao YX, Yang Y, Yanlin Z, Yao SY, Zhu B
Philip W Fowler, Carla Wright, Helen Spiers, Tingting Zhu, Elisabeth ML Baeten, Sarah W Hoosdally, Ana L Gibertoni Cruz, Aysha Roohi, Samaneh Kouchaki, Timothy M Walker, Timothy EA Peto, Grant Miller, Chris Lintott, David Clifton, Derrick W Crook, A Sarah Walker, The Zooniverse Volunteer Community, The CRyPTIC Consortium: A crowd of BashTheBug volunteers reproducibly and accurately measure the minimum inhibitory concentrations of 13 antitubercular drugs from photographs of 96-well broth microdilution plates, ELife, 75046 (2022), 1.

7. Kouchaki S, Yang Y, Lachapelle A, Walker TM, Walker AS, Hoosdally SJ, Cruz AL, Carter J, Grazian C, Earle SG, Fowler PW, Iqbal Z, Hunt M, Knaggs J, Smith GE, Rathod P, Jarrett L, Matias D, Cirillo DM, Borroni E, Battaglia S, Ghodousi A, Spitaler A, Cabibbe A, Tahseen S, Nilgiriwala K, Shah S, Rodrigues C, Kambli P, Surve U, Khot R, Niemann S, Merker M, Hoffmann H, Todt K, Plesnik S, Ismail N, Omar SV, Joseph L, Thwaites G, Thuong TNT, Ngoc NH, Srinivasan V, Moore D, Coronel J, Solano W, Gao GF, He G, Zhao Y, Liu C, Ma A, Zhu B, Laurenson I, Claxton P, Koch A, Wilkinson R, Lalvani A, Posey J, Gardy J, Werngren J, Paton N, Jou R, Wu MH, Lin WH, Ferrazoli L, Oliveira R, Arandjelovic I, Chaiprasert A, Comas I, Roig CR, Drobniewski FA, Farhat MR, Gao Q, Hee ROT, Sintchenko V, Supply P, van Soolingen D, Peto TEA, Crook DW, Clifton D
Samaneh Kouchaki, Yang Yang, Alexander Lachapelle, Timothy M. Walker, A. Sarah Walker, CRyPTIC Consortium, Timothy E. A. Peto, Derrick W. Crook and David A. Clifton: Multi-Label Random Forest Model for Tuberculosis Drug Resistance Classification and Mutation Ranking, Frontiers in Microbiology, 11 (2021), 1.

8. Wilson D, Crook DW, Peto TEA, Walker AS, Hoosdally SJ, Cruz AL, Carter J, Grazian C, Earle SG, Kouchaki S, Lachapelle A, Yang Y, Clifton DA, Fowler PW, Iqbal Z, Hunt M, Knaggs J, Smith EG, Rathod P, Jarrett L, Matias D, Cirillo DM, Borroni E, Battaglia S, Ghodousi A, Spitaleri A, Cabibbe A, Tahseen S, Nilgiriwala K, Shah S, Rodrigues C, Kambli P, Surve U, Khot R, Niemann S, Kohl TA, Merker M, Hoffmann H, Todt K, Plesnik S, Ismail N, Omar SV, Joseph L, Thwaites G, Thuong TNT, Ngoc NH, Srinivasan V, Walker TM, Moore D, Coronel J, Solano W, Gao GF, He G, Zhao Y, Liu C, Ma A, Zhu B, Laurenson I, Claxton P, Koch A, Wilkinson R, Lalvani A, Posey J, Gardy J, Werngren J, Paton N, Jou R, Wu MH, Lin WH, Ferrazoli L, Siqueira de Oliveira R, Arandjelovic I, Chaipresert A, Comas I, Roig CJ, Drobniewski FA, Farhat MR, Gao Q, Hee ROT, Sintchenko V, Supply P, van Soolingen D
Wilson, D., Crook, D.W., Peto, T.E.A., Walker, A.S., Hoosdally, S.J., Gibertoni Cruz, A.L., Carter, J., Grazian, C., Earle, S.G., Kouchaki, S., Lachapelle, A., Yang, Y., Clifton, D.A., Fowler, P.W., Iqbal, Z., Hunt, M., Knaggs, J., Smith, E.G., Rathod, P., Jarrett, L., Matias, D., Cirillo, D.M., Borroni, E., Battaglia, S., Ghodousi, A., Spitaleri, A., Cabibbe, A., Tahseen, S., Nilgiriwala, K., Shah, S., Rodrigues, C., Kambli, P., Surve, U., Khot, R., Niemann, S., Kohl, T.A., Merker, M., Hoffmann, H., Todt, K., Plesnik, S., Ismail, N., Omar, S.V., Joseph, L., Thwaites, G., Thuong, T.N.T., Ngoc, N.H., Srinivasan, V., Walker, T.M., Moore, D., Coronel, J., Solano, W., Gao, G.F., He, G., Zhao, Y., Liu, C., Ma, A., Zhu, B., Laurenson, I., Claxton, P., Koch, A., Wilkinson, R., Lalvani, A., Posey, J., Gardy, J., Werngren, J., Paton, N., Jou, R., Wu, M.H., Lin, W.H., Ferrazoli, L., Siqueira de Oliveira, R., Arandjelovic, I., Chaipresert, A., Comas, I., Roig, C.J., Drobniewski, F.A., Farhat, M.R., Gao, Q., Hee, R.O.T., Sintchenko, V., Supply, P., van Soolingen, D.: GenomegaMap: within-species genome-wide d_N/d_S estimation from over 10,000 genomes, Molecular Biology and Evolution, msaa069 (2020), na.

9. Kouchaki S, Yang Y, Walker TM, Walker AS, Wilson DJ, Peto TEA, Crook DW, Clifton D, Hoosdally SJ, Gibertoni-Cruz AL, Carter J, Grazian C, Fowler PW, Iqbal Z, Hunt M, Smith GE, Rathod P, Jarrett L, Matias D, Cirillo DM, Borroni E, Battaglia E, Ghodousi A, Spitaleri A, Cabibbe A, Tahseen S, Nilgiriwala K, Shah S, Rodrigues C, Kambli P, Surve U, Khot R, Niemann S, Kohl T, Merker M, Hoffmann H, Molodtsov N, Plesnik S, Ismail N, Omar SV, Joseph L, Marubini E, Thwaites G, Thuong TNT, Ngoc NH, Srinivasan V, Moore D, Coronel J, Solano W, Gao GF, He G, Zhao Y, Ma A, Liu C, Zhu B, Laurenson I, Claxton P, Wilkinson RJ, Lalvani A, Posey J, Gardy J, Werngren J, Paton N, Jou R, Wu MH, Lin WH, Ferrazoli L, Siqueira de Oliveira R, Arandjelovic I, Comas I, Drobniewski F, Gao Q, Sintchenko V, Supply P, SoolingenD
Kouchaki, S., Yang, Y., Walker, T. M., Walker, A. S., Wilson, D. J., Peto, T. E., Crook, D.W., Clifton, D. A., Hoosdally, S.J., Gibertoni-Cruz, A.L., Carter, J., Grazian, C., Fowler, P.W., Iqbal, Z., Hunt, M., Smith, G.E., Rathod, P., Jarrett, L., Matias, D., Cirillo, D.M., Borroni, E., Battaglia, E., Ghodousi, A., Spitaleri, A., Cabibbe, A. Tahseen, S., Nilgiriwala, K., Shah, S., Rodrigues, C., Kambli, P., Surve, Utkarsha, Khot, Rukshar, Niemann, S., Kohl, T., Merker, M., Hoffmann, H., Molodtsov, N., Plesnik, S., Ismail, N., Omar, S.V., Joseph, L., Marubini, E., Thwaites, G., Thuong, T.N.T., Ngoc, N.H., Srinivasan, V., Moore, D., Coronel, J., Solano, W., Gao, G.F., He, G., Zhao, Y., Ma, A., Liu, C., Zhu, B., Laurenson, I., Claxton, P., Wilkinson, R.J., Lalvani, A., Posey, J., Gardy, J., Werngren, J., Paton, N., Jou, R., Wu, M.H., Lin, W.H., Ferrazoli, L., de Oliveira, R.S., Arandjelovic, I., Comas, I., Drobniewski, F., Gao, Q., Sintchenko, V., Supply, P., van Soolingen, D.: Application of machine learning techniques to tuberculosis drug resistance analysis, Bioinformatics, 35 (2019), no. 13, 2276–2282.

10. Yang Y, Walker TM, Walker AS, Wilson DJ, Peto TEA, Crook DW, Shamout F, Arandjelovic I, Comas I, Farhat MR, Gao Q, Sintchenko V, Soolingen D, Hoosdally S, Cruz AL, Carter J, Grazian C, Earle S, Kouchaki S, Fowler PW, Iqbal Z, Hunt M, Smith EG, Rathod P, Jarrett L, Matias D, Cirillo DM, Borroni E, Battaglia S, Ghodousi A, Spitaleri A, Cabibbe A, Tahseen S, Nilgiriwala K, Shah S, Rodrigues C, Kambli P, Surve U, Khot R, Niemann S, Kohl T, Merker M, Hoffmann H, Molodtsov N, Plesnik S, Ismail N, Omar SV, Joseph L, Thwaites G, Thuong TNT, Ngoc NH, Srinivasan V, Moore D, Coronel J, Solano W, Gao GF, He G, Zhao Y, Ma A, Liu C, Zhu B, Laurenson I, Claxton P, Koch A, Wilkinson R, Lalvani A, Posey J, Gardy J, Werngren J, Paton N, Jou R, Wu MH, Lin WH, Ferrazoli L, Siqueira de Oliveira R, Zhu T, Clifton DA
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