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Exact matches for:

• Author = Lin Y     [web profile page]

1. Sun Q, Gao R, Lin Y, Zhou X, Wang T, He J
Qingjia Sun, Rui Gao, Yingxin Lin, Xianchao Zhou, Tao Wang, Jian He: Leveraging single-cell RNA-seq for uncovering naïve B cells associated with better prognosis of hepatocellular carcinoma, Medcomm, 5 (2024), no. 9, Article no. e563 (18 pages).

2. Lin Y, Wu TY, Chen X, Wan S, Chao B, Xin J, Yang YH, Wong WH, Wang RYX
Yingxin Lin, Tung-Yu Wu, Xi Chen, Sheng Wan, Brian Chao, Jingxue Xin, Jean Y H Yang, Wing H Wong and Y X Rachel Wang: Data integration and inference of gene regulation using single-cell temporal multimodal data with scTIE, Genome Research, 34 (2024), no. 1, 119–133.

3. Fu X, Lin Y, Lin DM, Mechtersheimer D, Wang C, Ameen F, Ghazanfar S, Patrick E, Yang YH
Xiaohang Fu, Yingxin Lin, David M. Lin, Daniel Mechtersheimer, Chuhan Wang, Farhan Ameen, Shila Ghazanfar, Ellis Patrick, Jinman Kim & Jean Y. H. Yang: BIDCell: Biologically-informed self-supervised learning for segmentation of subcellular spatial transcriptomics data, Nature Communications, 15 (2024), Article 509 (17 pages).

4. Kim D, Tran A, Kim HJ, Lin Y, Yang YH, Yang P
Daniel Kim, Andy Tran, Hani Jieun Kim, Yingxin Lin, Jean Yee Hwa Yang & Pengyi Yang: Gene regulatory network reconstruction: harnessing the power of single-cell multi-omic data, npj Systems Biology and Applications, 9 (2023), Article number 51.

5. Zhang Y, Hu A, Lin Y, Cao Y, Muller S, Wong G, Yang YH
Yunwei Zhang, Anne Hu, Yingxin Lin, Yue Cao, Samuel Muller, Germaine Wong & Jean Yee Hwa Yang: simKAP: simulation framework for the kidney allocation process with decision making model, Scientific Reports, 13 (2023), Article number 16367.

6. Lin Y, Loo L, Tran A, Lin DM, Moreno C, Hesselson D, Neely GG, Yang YH
Yingxin Lin,Lipin Loo,Andy Tran,David M. Lin,Cesar Moreno,Daniel Hesselson,G. Gregory Neely,Jean Y. H. Yang: Scalable workflow for characterization of cell-cell communication in COVID-19 patients, PLoS Computational Biology, 18 (2022), 10.

7. Cao Y, Lin Y, Patrick E, Yang P, Yang YH
Yue Cao, Yingxin Lin, Ellis Patrick, Pengyi Yang and Jean Yee Hwa Yang: scFeatures: multi-view representations of single-cell and spatial data for disease outcome prediction, Bioinformatics, 38 (Open Access) (2022), no. 20, 4745–4753.

8. He J, Lin Y, Meng M, Li J, Yang YH, Wang H
Jian He, Yingxin Lin, Mei Meng, Jingquan Li, Jean YH. Yang, Hui Wang: Construction of a Human Cell Landscape of COVID-19 Infection at Single-cell Level, Aging and Disease, 12 (2021), no. 3, 705–709.

9. Su X, Zhao L, Shi Y, Zhang R, Long Q, Bai S, Luo Q, Lin Y, Zou X, Ghazanfar S, Tao K, Yang G, Wang L, He KY, Cui X, He J, Wu JX, Han B, Yan B, Deng B, Wang N, Li X, Yang P, Hou S, Sun J, Yang YH, Chen J, Han ZG
Xianbin Su, Linan Zhao, Yi Shi, Rui Zhang, Qi Long, Shihao Bai, Qing Luo, Yingxin Lin, Xin Zou, Shila Ghazanfar, Kun Tao, Guoliang Yang, Lan Wang, Kun‑Yan He, Xiaofang Cui, Jian He, Jiao‑Xiang Wu, Bo Han, Bin Yan, Biao Deng, Na Wang, Xiaolin Li, Pengyi Yang, Shangwei Hou, Jielin Sun, Jean Y H Yang, Jinhong Chen and Ze‑Guang Han: Clonal evolution in liver cancer at single-cell and single-variant resolution, Journal of Hematology and Oncology, 14 (2021), no. 1, Article Number 22.

10. Ghazanfar S, Lin Y, Su X, Lin DM, Patrick E, Han ZG, Marioni JC, Yang YH
Shila Ghazanfar, Yingxin Lin, Xianbin Su, David M Lin, Ellis Patrick, Ze Guang Han, John C Marioni and Jean Yee Hwa Yang: Investigating higher-order interactions in single-cell data with scHOT, Nature Methods, 17 (2020), 799–806.

11. Lin Y, Cao Y, Kim HJ, Salim A, Speed TP, Lin DM, Yang P, Yang YH
Yingxin Lin, Yue Cao, Hani Jieun Kim, Agus Salim, Terence P Speed, David M Lin, Pengyi Yang, Jean Yee Hwa Yang: scClassify: sample size estimation and multiscale classification of cells using single and multiple reference, Molecular Systems Biology, 16 (2020), e9389.

12. Kim HJ, Lin Y, Geddes TA, Yang P, Yang YH
Hani Jieun Kim, Yingxin Lin, Thomas A Geddes, Jean Yee Hwa Yang, Pengyi Yang: CiteFuse enables multi-modal analysis of CITE-seq data, Bioinformatics, 36 (2020), 4137–4143.

13. Cao Y, Lin Y, Ormerod JT, Yang P, Yang YH, Lo KK
Yue Cao, Yingxin Lin, John T Ormerod, Pengyi Yang, Jean Y H Yang and Kitty K Lo: ScDC: Single cell differential composition analysis, BMC Bioinformatics, 20 (2019), no. Suppl 19:721, 12 pages.

14. Lin Y, Ghazanfar S, Strbenac D, Wang A, Patrick E, Lin DM, Speed T, Yang YH, Yang P
Yingxin Lin, Shila Ghazanfar, Dario Strbenac, Andy Wang, Ellis Patrick, David M Lin, Terence Speed, Jean YH Yang, Pengyi Yang: Evaluating stably expressed genes in single cells, GigaScience, 8 (2019), no. 9, giz106.

15. Lin Y, Ghazanfar S, Wang KYX, Gagnon-Bartsch JA, Lo KK, Su X, Han ZG, Ormerod JT, Speed TP, Yang P, Yang YH
Yingxin Lin , Shila Ghazanfar, Kevin Y X Wang, Johann A Gagnon-Bartsch , Kitty K Lo , Xianbin Su, Ze-Guang Han, John T Ormerod , Terence P Speed, Pengyi Yang and Jean Yee Hwa Yang: scMerge leverages factor analysis, stable expression, and pseudoreplication to merge multiple single-cell RNA-seq datasets, PNAS, 116 (2019), no. 20, 9775–9784.

16. Kim T, Chen IR, Lin Y, Wang A, Yang YH, Yang P
Taiyun Kim, Irene R. Chen, Yingxin Lin, Andy Wang, Jean Y.H. Yang and Pengyi Yang: Impact of similarity metrics on single-cell RNA-seq data clustering, Briefings in Bioinformatics, (2018), EPub.