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Exact matches for:

• Author = Ghazanfar S     [web profile page]

1. Patrick R, Janbandhu V, Tallapragada V, Tan SSM, McKinna EE, Contreras O, Ghazanfar S, Humphreys DT, Murray NJ, Harvey RP
Ralph Patrick, Vaibhao Janbandhu, Vikram Tallapragada, Shannon S M Tan, Emily E McKinna, Osvaldo Contreras, Shila Ghazanfar, David T Humphreys, Nicholas J Murray and Richard P Harvey: Integration mapping of cardiac fibroblast single-cell transcriptomes elucidates cellular principles of fibrosis in diverse pathologies, Science Advances, 10 (2024), no. 25, eadk8501 (27 pages).

2. Janbandhu V, Tallapragada V, Li JV, Shewale B, Ghazanfar S, Patrick R, Cox CD, Harvey RP
Vaibhao Janbandhu, Vikram Tallapragada, Jinyuan Vero Li, Bharti Shewale, Shila Ghazanfar, Ralph Patrick, Charles D Cox , Richard P Harvey: Novel Mouse Model for Selective Tagging, Purification, and Manipulation of Cardiac Myofibroblasts, Circulation, 149 (2024), no. 24, 1931–1934.

3. Ghazanfar S, Guibentif C, Marioni JC
Shila Ghazanfar, Carolina Guibentif & John C Marion: Stabilized mosaic single-cell data integration using unshared features, Nature Biotechnology, 42 (2024), no. 2, 284–292.

4. Fu X, Lin Y, Lin DM, Mechtersheimer D, Wang C, Ameen F, Ghazanfar S, Patrick E, Yang YH
Xiaohang Fu, Yingxin Lin, David M. Lin, Daniel Mechtersheimer, Chuhan Wang, Farhan Ameen, Shila Ghazanfar, Ellis Patrick, Jinman Kim & Jean Y. H. Yang: BIDCell: Biologically-informed self-supervised learning for segmentation of subcellular spatial transcriptomics data, Nature Communications, 15 (2024), Article 509 (17 pages).

5. Barry-Hundeyin M, Carrot-Zhang J, Dayton T, Ghazanfar S, Guenther LM, Nguyen DTT, Pitarresi JR, Rajput S, Santana-Codina N, Shree T, Zeng Z, Zhang Y
Mautin Barry-Hundeyin, Jian Carrot-Zhang, Talya Dayton, Shila Ghazanfar, Lillian M Guenther, Diu T T Nguyen, Jason R. Pitarresi, Sheerien Rajput, Naiara Santana-Codina, Tanaya Shree, Zexian Zeng and Ying Zhang: The 2022 generation, Nature Cancer, 3 (2022), no. 12, 1426–1431.

6. Havula E, Ghazanfar S, Lamichane N, Francis D, Hasygar K, Liu Y, Alton LA, Johnstone J, Needham EJ, Pulpitel T, Clark T, Niranjan HN, Shang V, Tong V, Jiwnani N, Audia G, Alves AN, Sylow L, Mirth C, Neely GG, Yang YH, Hietakangas V, Simpson SJ, Senior AM
E Havula, S Ghazanfar, N Lamichane, D Francis , K Hasygar, Y Liu, L A Alton, J Johnstone, E J Needham, T Pulpitel, T Clark , H N Niranjan , V Shang, V Tong , N Jiwnani, G Audia, A N Alves, L Sylow, C Mirth, G G Neely, J Yang, V.Hietakangas, S J Simpson and A M Senior: Genetic variation of macronutrient tolerance in Drosophila melanogaster, Nature Communications, 13 (Open Access) (2022), no. 1, Art. 1637 (16 pages).

7. Lohoff T, Ghazanfar S, Missarova A, Koulena N, Pierson N, Griffiths JA, Bardot ES, Eng CHL, Tyser RCV, Argelaguet R, Guibentif C, Srinivas S, Briscoe J, Simons BD, Hadjantonakis AK, Göttgens B, Reik W, Nichols J, Cai L, Marioni JC
Tim Lohoff, Shila Ghazanfar, Alsu Missarova, Noushin Koulena, Nico Pierson, Jonathan A. Griffiths, Evan S. Bardot, Chee-Huat L. Eng, Richard C. V. Tyser, Ricard Argelaguet, Carolina Guibentif, Shankar Srinivas, James Briscoe, Benjamin D. Simons, Anna-Katerina Hadjantonakis, Berthold Göttgens, Wolf Reik, Jennifer Nichols, Long Cai and John C. Marioni: Integration of spatial and single-cell transcriptomic data elucidates mouse organogenesis, Nature Biotechnology, 40 (2021), 74–85.

8. Francis D, Ghazanfar S, Havula E, Krycer JR, Strbenac D, Senior AM, Minard AY, Geddes T, Nelson ME, Weiss F, Stöckli J, Yang YH, James DE
Deanne Francis, Shila Ghazanfar, Essi Havula, James R Krycer, Dario Strbenac, Alistair Senior, Annabel Y Minard, Thomas Geddes, Marin E Nelson, Fiona Weiss, Jacqueline Stöckli, Jean Y H Yang, David E James: Genome-wide analysis in Drosophila reveals diet-by-gene interactions and uncovers diet-responsive genes, G3 Genes Genomes Genetics, 11 (2021), no. 10, jkab171, 14 pages.

9. Su X, Zhao L, Shi Y, Zhang R, Long Q, Bai S, Luo Q, Lin Y, Zou X, Ghazanfar S, Tao K, Yang G, Wang L, He KY, Cui X, He J, Wu JX, Han B, Yan B, Deng B, Wang N, Li X, Yang P, Hou S, Sun J, Yang YH, Chen J, Han ZG
Xianbin Su, Linan Zhao, Yi Shi, Rui Zhang, Qi Long, Shihao Bai, Qing Luo, Yingxin Lin, Xin Zou, Shila Ghazanfar, Kun Tao, Guoliang Yang, Lan Wang, Kun‑Yan He, Xiaofang Cui, Jian He, Jiao‑Xiang Wu, Bo Han, Bin Yan, Biao Deng, Na Wang, Xiaolin Li, Pengyi Yang, Shangwei Hou, Jielin Sun, Jean Y H Yang, Jinhong Chen and Ze‑Guang Han: Clonal evolution in liver cancer at single-cell and single-variant resolution, Journal of Hematology and Oncology, 14 (2021), no. 1, Article Number 22.

10. Ghazanfar S, Lin Y, Su X, Lin DM, Patrick E, Han ZG, Marioni JC, Yang YH
Shila Ghazanfar, Yingxin Lin, Xianbin Su, David M Lin, Ellis Patrick, Ze Guang Han, John C Marioni and Jean Yee Hwa Yang: Investigating higher-order interactions in single-cell data with scHOT, Nature Methods, 17 (2020), 799–806.

11. Lin Y, Ghazanfar S, Strbenac D, Wang A, Patrick E, Lin DM, Speed T, Yang YH, Yang P
Yingxin Lin, Shila Ghazanfar, Dario Strbenac, Andy Wang, Ellis Patrick, David M Lin, Terence Speed, Jean YH Yang, Pengyi Yang: Evaluating stably expressed genes in single cells, GigaScience, 8 (2019), no. 9, giz106.

12. Lin Y, Ghazanfar S, Wang KYX, Gagnon-Bartsch JA, Lo KK, Su X, Han ZG, Ormerod JT, Speed TP, Yang P, Yang YH
Yingxin Lin , Shila Ghazanfar, Kevin Y X Wang, Johann A Gagnon-Bartsch , Kitty K Lo , Xianbin Su, Ze-Guang Han, John T Ormerod , Terence P Speed, Pengyi Yang and Jean Yee Hwa Yang: scMerge leverages factor analysis, stable expression, and pseudoreplication to merge multiple single-cell RNA-seq datasets, PNAS, 116 (2019), no. 20, 9775–9784.

13. Ghazanfar S, Strbenac D, Ormerod JT, Yang YH, Patrick E
Shila Ghazanfar, Dario Strbenac, John T Ormerod, Jean Y H Yang and Ellis Patrick: DCARS: Differential correlation across ranked samples, Bioinformatics, 35 (2019), no. 5, 823–829.

14. Lim SY, Lee JH, Gide TN, Menzies AM, Guminski A, Carlino MS, Breen EJ, Yang YH, Ghazanfar S, Kefford RF, Scolyer RA, Long GV, Rizos H
Su Y Lim, Jenny H Lee, Tuba N Gide, Alexander M Menzies, Alexander Guminski, Matteo S Carlino, Edmond J Breen, Jean Y H Yang, Shila Ghazanfar, Richard F Kefford, Richard A Scolyer, Georgina V Long and Helen Rizos: Circulating cytokines predict immune-related toxicity in melanoma patients receiving anti-PD-1–based immunotherapy, Clinical Cancer Research, 25 (2019), no. 5, 1557–1563.

15. Bisogni AJ, Ghazanfar S, Williams EO, Marsh HM, Yang YH, Lin DM
A.J. Bisogni and S. Ghazanfar and E. O. Williams and H.M. Marsh and J. Y. H. Yang and D.M. Lin: Tuning of delta-protocadherin adhesion through combinatorial diversity, Elife, 7 (2018), EPub.

16. Lim SY, Lee JH, Gide TN, Menzies AM, Guminski A, Carlino MS, Breen EJ, Yang YH, Ghazanfar S, Kefford RF, Scolyer RA, Long GV, Rizos H
Su Y Lim, Jenny H Lee, Tuba N Gide, Alexander M Menzies, Alexander Guminski, Matteo S Carlino, Edmond J Breen, Jean YH Yang, Shila Ghazanfar, Richard F Kefford, Richard A Scolyer, Georgina V Long, Helen Rizos: Circulating cytokines predict immune-related toxicity in melanoma patients receiving anti-PD-1-based immunotherapy, Clinical Cancer Research, 1 (2018), 2795.2018.

17. Sykes EK, McDonald CE, Ghazanfar S, Mactier S, Thompson JF, Scolyer RA, Yang YH, Mann GJ, Christopherson RI
Erin K Sykes, Cassandra E McDonald, Shila Ghazanfar, Swetlana Mactier, John F Thompson, Richard A Scolyer, Jean Y Yang, Graham J Mann, Richard I Christopherson: A 14-Protein Signature for Rapid Identification of Poor Prognosis Stage III Metastatic Melanoma, PROTEOMICS–Clinical Applications, 12 (2018), no. 3, 1700094.

18. Ghazanfar S, Strbenac D, Ormerod JT, Yang YH, Patrick E
Shila Ghazanfar, Dario Strbenac, John T Ormerod, Jean Y H Yang, Ellis Patrick: DCARS: differential correlation across ranked samples, Bioinformatics, 1 (2018), bty698.

19. Ghazanfar S, Vuocolo T, Morrison JL, Nicholas LM, Millen ICM, Yang YH, Buckley MJ, Tellam RL
Shila Ghazanfar, Tony Vuocolo, Janna L. Morrison, Lisa M. Nicholas, Isabella C. McMillen, Jean Y. H. Yang, Michael J. Buckley and Ross L. Tellam: Gene expression allelic imbalance in ovine brown adipose tissue impacts energy homeostasis, PLOS ONE, 12 (2017), e0180378.

20. Yang P, Patrick E, Humphrey SJ, Ghazanfar S, James DE, Jothi R, Yang YH
Pengyi Yang, Ellis Patrick, Sean J Humphrey, Shila Ghazanfar, David E James, Raja Jothi, Jean Yee Hwa Yang: KinasePA: Phosphoproteomics data annotation using hypothesis driven kinase perturbation analysis, Proteomics, 16 (2016), no. 13, 1868–1871.

21. Ghazanfar S, Yang YH
Shila Ghazanfar and Jean Yee Hwa Yang: Characterizing mutation–expression network relationships in multiple cancers, Computational Biology and Chemistry, 63 (2016), 73–82.

22. Ghazanfar S, Bisogni AJ, Ormerod JT, Lin DM, Yang YH
Shila Ghazanfar, Adam J. Bisogni, John T. Ormerod, David M. Lin, and Jean Y. H. Yang: Integrated single cell data analysis reveals cell specific networks and novel coactivation markers, BMC Systems Biology, 10 (2016), no. S5, 11–24.

23. Yang P, Patrick E, Humphrey SJ, Ghazanfar S, James DE, Jothi R, Yang YH
Pengyi Yang, Ellis Patrick, Sean J. Humphrey, Shila Ghazanfar, David E. James, Raja Jothi, Jean Yee Hwa Yang: KinasePA: Phosphoproteomics data annotation using hypothesis driven kinase perturbation analysis, Proteomics, 16 (2016), 1868 – 1871.